Genetic architecture of subcortical brain structures in 38,851 individuals
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ABSTRACT Subcortical brain structures are integral to motion, consciousness, emotions and learning. We identified common genetic variation related to the volumes of the nucleus accumbens,
amygdala, brainstem, caudate nucleus, globus pallidus, putamen and thalamus, using genome-wide association analyses in almost 40,000 individuals from CHARGE, ENIGMA and UK Biobank. We show
that variability in subcortical volumes is heritable, and identify 48 significantly associated loci (40 novel at the time of analysis). Annotation of these loci by utilizing gene expression,
methylation and neuropathological data identified 199 genes putatively implicated in neurodevelopment, synaptic signaling, axonal transport, apoptosis, inflammation/infection and
susceptibility to neurological disorders. This set of genes is significantly enriched for _Drosophila_ orthologs associated with neurodevelopmental phenotypes, suggesting evolutionarily
conserved mechanisms. Our findings uncover novel biology and potential drug targets underlying brain development and disease. Access through your institution Buy or subscribe This is a
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* Log in * Learn about institutional subscriptions * Read our FAQs * Contact customer support SIMILAR CONTENT BEING VIEWED BY OTHERS GENOMIC ANALYSIS OF INTRACRANIAL AND SUBCORTICAL BRAIN
VOLUMES YIELDS POLYGENIC SCORES ACCOUNTING FOR VARIATION ACROSS ANCESTRIES Article 21 October 2024 GENOME-WIDE ASSOCIATION STUDY OF CEREBELLAR VOLUME PROVIDES INSIGHTS INTO HERITABLE
MECHANISMS UNDERLYING BRAIN DEVELOPMENT AND MENTAL HEALTH Article Open access 16 July 2022 THE GENETIC ARCHITECTURE OF HUMAN BRAINSTEM STRUCTURES AND THEIR INVOLVEMENT IN COMMON BRAIN
DISORDERS Article Open access 11 August 2020 DATA AVAILABILITY The genome-wide summary statistics that support the findings of this study are available from the CHARGE dbGaP (accession code:
phs000930) and ENIGMA (http://enigma.ini.usc.edu/research/download-enigma-gwas-results) websites. REFERENCES * Marsden, C. D. The mysterious motor function of the basal ganglia: the Robert
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_Methods Mol. Biol._ 1478, 1–31 (2016). Article CAS PubMed PubMed Central Google Scholar Download references ACKNOWLEDGEMENTS We thank all of the study participants for contributing to
this research. Full acknowledgements and grant support details are provided in the Supplementary Note. AUTHOR INFORMATION Author notes * These authors contributed equally: Claudia L.
Satizabal, Hieab H. H. Adams, Derrek P. Hibar, Charles C. White. * These authors jointly supervised this work: Sarah E. Medland, Joshua M. Shulman, Paul M. Thompson, Sudha Seshadri, M. Arfan
Ikram. AUTHORS AND AFFILIATIONS * Glenn Biggs Institute for Alzheimer’s and Neurodegenerative Diseases, UT Health San Antonio, San Antonio, TX, USA Claudia L. Satizabal * Department of
Population Health Sciences, UT Health San Antonio, San Antonio, TX, USA Claudia L. Satizabal * The Framingham Heart Study, Framingham, MA, USA Claudia L. Satizabal, Jayandra J. Himali,
Honghuang Lin, Alexa S. Beiser, Anita L. DeStefano & Sudha Seshadri * Department of Neurology, Boston University School of Medicine, Boston, MA, USA Claudia L. Satizabal, Jayandra J.
Himali, Alexa S. Beiser, Stéphanie Debette & Sudha Seshadri * Department of Epidemiology, Erasmus MC, Rotterdam, the Netherlands Hieab H. H. Adams, Maria J. Knol, Gennady V. Roshchupkin,
Sven J. van der Lee, Meike W. Vernooij, Najaf Amin, Albert Hofman, André G. Uitterlinden, M. Kamran Ikram, Cornelia M. van Duijn & M. Arfan Ikram * Department of Radiology and Nuclear
Medicine, Erasmus MC, Rotterdam, the Netherlands Hieab H. H. Adams, Gennady V. Roshchupkin, Meike W. Vernooij, Wiro J. Niessen, Tonya White & M. Arfan Ikram * Department of Clinical
Genetics, Erasmus MC, Rotterdam, the Netherlands Hieab H. H. Adams * Imaging Genetics Center, USC Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine,
University of Southern California, Los Angeles, CA, USA Derrek P. Hibar, Jason L. Stein, Neda Jahanshad, Christopher R. K. Ching, Christopher D. Whelan, Joshua W. Cheung, Arvin Saremi &
Paul M. Thompson * Cell Circuits Program, Broad Institute, Cambridge, MA, USA Charles C. White & Philip L. De Jager * Center for Translational and Computational Neuroimmunology,
Department of Neurology, Columbia University Medical Center, New York, NY, USA Charles C. White & Philip L. De Jager * Department of Genetics, University of North Carolina, Chapel Hill,
NC, USA Jason L. Stein * UNC Neuroscience Center, University of North Carolina, Chapel Hill, NC, USA Jason L. Stein * Institute for Medical Informatics, Statistics and Epidemiology,
University of Leipzig, Leipzig, Germany Markus Scholz & Markus Loeffler * LIFE: The Leipzig Research Center for Civilization Diseases, University of Leipzig, Leipzig, Germany Markus
Scholz, Ralph Burkhardt, Markus Loeffler & Matthias L. Schroeter * University of Bordeaux, Inserm, Bordeaux Population Health Research Center, Team VINTAGE, UMR 1219, Bordeaux, France
Muralidharan Sargurupremraj, Ganesh Chauhan & Stéphanie Debette * Department of Medical Informatics, Erasmus MC, Rotterdam, the Netherlands Gennady V. Roshchupkin & Wiro J. Niessen *
Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA Albert V. Smith * Faculty of Medicine, University of Iceland, Reykjavík, Iceland Albert V. Smith & Vilmundur
Gudnason * Icelandic Heart Association, Kopavogur, Iceland Albert V. Smith & Vilmundur Gudnason * Cardiovascular Health Research Unit, Department of Medicine, University of Washington,
Seattle, WA, USA Joshua C. Bis & Bruce M. Psaty * The Brown Foundation Institute of Molecular Medicine, University of Texas Health Science Center at Houston, Houston, TX, USA Xueqiu Jian
& Myriam Fornage * Department of Psychology, Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK Michelle Luciano, Saskia P. Hagenaars, David
C. M. Liewald, Andrew M. McIntosh, Ian J. Deary & Joanna M. Wardlaw * Clinical Division of Neurogeriatrics, Department of Neurology, Medical University of Graz, Graz, Austria Edith Hofer
& Reinhold Schmidt * Institute for Medical Informatics, Statistics and Documentation, Medical University of Graz, Graz, Austria Edith Hofer * Institute for Community Medicine,
University Medicine Greifswald, Greifswald, Germany Alexander Teumer & Henry Völzke * Rush Alzheimer’s Disease Center, Rush University Medical Center, Chicago, IL, USA Jingyun Yang,
Konstantinos Arfanakis, Debra A. Fleischman & David A. Bennett * Department of Neurological Sciences, Rush University Medical Center, Chicago, IL, USA Jingyun Yang, Debra A. Fleischman
& David A. Bennett * GeneSTAR Research Program, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA Lisa R. Yanek, Diane M. Becker & Paul A.
Nyquist * Department of Neurology, Baylor College of Medicine, Houston, TX, USA Tom V. Lee & Joshua M. Shulman * Department of Biostatistics, Boston University School of Public Health,
Boston, MA, USA Shuo Li, Jayandra J. Himali, Qiong Yang, Alexa S. Beiser & Anita L. DeStefano * Department of Genetics, Harvard Medical School, Boston, MA, USA Yanhui Hu * Singapore Eye
Research Institute, Singapore National Eye Centre, Singapore, Singapore Jia Yu Koh, Ching-Yu Cheng & Tien Yin Wong * Division of Intramural Research, Population Sciences Branch, National
Heart, Lung and Blood Institute, Framingham, MA, USA John D. Eicher & Andrew D. Johnson * MRC-SGDP Centre, Institute of Psychiatry, Psychology and Neuroscience, King’s College London,
London, UK Sylvane Desrivières, Tianye Jia, Christine Macare & Gunter Schumann * Department of Cognitive Neuroscience, Radboud University Medical Center, Nijmegen, the Netherlands
Alejandro Arias-Vasquez, Jennifer S. Richards, Daan van Rooij, Jan K. Buitelaar & Guillén Fernández * Department of Human Genetics, Radboud University Medical Center, Nijmegen, the
Netherlands Alejandro Arias-Vasquez, Janita Bralten, Martine Hoogman, Marieke Klein, Elena Shumskaya, Marjolein M. J. van Donkelaar, Thomas Wolfers, Hans van Bokhoven, Han G. Brunner &
Barbara Franke * Department of Psychiatry, Radboud University Medical Center, Nijmegen, the Netherlands Alejandro Arias-Vasquez, Nanda Rommelse & Barbara Franke * Donders Institute for
Brain, Cognition and Behaviour, Radboud University, Nijmegen, the Netherlands Alejandro Arias-Vasquez, Janita Bralten, Martine Hoogman, Marieke Klein, Andre F. Marquand, Jennifer S.
Richards, Nanda Rommelse, Elena Shumskaya, Marjolein M. J. van Donkelaar, Daan van Rooij, Thomas Wolfers, Marcel P. Zwiers, Hans van Bokhoven, Han G. Brunner, Jan K. Buitelaar, Guillén
Fernández, Simon E. Fisher, Clyde Francks & Barbara Franke * Centre for Brain Research, Indian Institute of Science, Bangalore, India Ganesh Chauhan * CoE NORMENT, Division of Mental
Health and Addiction, Oslo University Hospital, Oslo, Norway Lavinia Athanasiu, Thomas Espeseth, Unn K. Haukvik, Lars T. Westlye, Dennis van der Meer, Ole A. Andreassen & Ingrid Melle *
CoE NORMENT, Institute of Clinical Medicine, University of Oslo, Oslo, Norway Lavinia Athanasiu, Nhat Trung Doan, Ingrid Agartz, Lars T. Westlye, Dennis van der Meer, Erik G. Jönsson, Ole A.
Andreassen & Ingrid Melle * Department of Genetics and Computational Biology, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia Miguel E. Rentería * Center for
Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA Sungeun Kim & Kwangsik Nho * Center for Neuroimaging, Radiology and Imaging
Sciences, Indiana University School of Medicine, Indianapolis, IN, USA Sungeun Kim, Kwangsik Nho, Shannon L. Risacher & Andrew J. Saykin * Indiana Alzheimer Disease Center, Indiana
University School of Medicine, Indianapolis, IN, USA Sungeun Kim, Kwangsik Nho, Shannon L. Risacher, Tatiana M. Foroud & Andrew J. Saykin * Max Planck Institute of Psychiatry, Munich,
Germany David Hoehn, Nazanin Mirza-Schreiber, Benno Pütz, Philipp G. Sämann, Florian Holsboer & Bertram Müller-Myhsok * Mathematics and Statistics, Murdoch University, Perth, Western
Australia, Australia Nicola J. Armstrong * Lieber Institute for Brain Development, Baltimore, MD, USA Qiang Chen, Aaron L. Goldman, Venkata S. Mattay & Daniel R. Weinberger * Department
of Psychology, Yale University, New Haven, CT, USA Avram J. Holmes * Department of Psychiatry, Massachusetts General Hospital, Boston, MA, USA Avram J. Holmes, Stefan Ehrlich, Phil H. Lee,
Randy L. Buckner, Joshua L. Roffman, Randy L. Gollub & Jordan W. Smoller * Department of Biological Psychology, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands Anouk den Braber,
Dorret I. Boomsma, Eco J. C. de Geus, Jouke-Jan Hottenga, Iryna O. Fedko & Dennis van ‘t Ent * Netherlands Twin Register, Vrije Universiteit, Amsterdam, the Netherlands Anouk den
Braber, Dorret I. Boomsma, Eco J. C. de Geus, Jouke-Jan Hottenga, Iryna O. Fedko & Dennis van ‘t Ent * Amsterdam Neuroscience, Amsterdam, the Netherlands Anouk den Braber, Dorret I.
Boomsma, Eco J. C. de Geus, Jouke-Jan Hottenga & Dennis van ‘t Ent * Alzheimer Center Amsterdam, Department of Neurology, Amsterdam Neuroscience, VU Amsterdam, Amsterdam UMC, Amsterdam,
the Netherlands Anouk den Braber * Medical University of Lodz, Lodz, Poland Iwona Kloszewska * Department of Integrative Medical Biology, Umeå University, Umeå, Sweden Micael Andersson &
Lars Nyberg * Umeå Centre for Functional Brain Imaging (UFBI), Umeå University, Umeå, Sweden Micael Andersson & Lars Nyberg * Department of Psychology, University of Oslo, Oslo, Norway
Thomas Espeseth * Central Institute of Mental Health, Medical Faculty Mannheim, University Heidelberg, Mannheim, Germany Oliver Grimm, Andreas Meyer-Lindenberg & Marcella Rietschel *
Department of Psychiatry, UMC Brain Center, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands Lucija Abramovic, Marc M. Bohlken, Marco P. Boks, Wiepke Cahn,
Hilleke E. Hulshoff Pol, Rachel M. Brouwer, René S. Kahn & Neeltje E. M. van Haren * The Royal College of Surgeons in Ireland, Dublin, Ireland Saud Alhusaini, Norman Delanty &
Christopher D. Whelan * Department of Neurology, Yale School of Medicine, New Haven, CT, USA Saud Alhusaini * Department of Psychiatry, Amsterdam Neuroscience, VU University Medical Center,
Amsterdam, the Netherlands Yuri Milaneschi, Brenda W. J. H. Penninx & Dick J. Veltman * Division of Psychiatry, Royal Edinburgh Hospital, University of Edinburgh, Edinburgh, UK Martina
Papmeyer, Stephen M. Lawrie, Andrew M. McIntosh & Jessika E. Sussmann * Division of Systems Neuroscience of Psychopathology, Translational Research Center, University Hospital of
Psychiatry, University of Bern, Bern, Switzerland Martina Papmeyer * Department of Medical Sciences, Molecular Medicine and Science for Life Laboratory, Uppsala University, Uppsala, Sweden
Tomas Axelsson * Division of Psychological and Social Medicine and Developmental Neurosciences, Faculty of Medicine, TU Dresden, Dresden, Germany Stefan Ehrlich & Esther Walton *
Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA Stefan Ehrlich, Allison Stevens, Randy L. Gollub & Douglas N. Greve * Department of
Psychiatry, University Hospital Marqués de Valdecilla, School of Medicine, University of Cantabria-IDIVAL, Santander, Spain Roberto Roiz-Santiañez * Department of Medicine, University
Hospital Marqués de Valdecilla, School of Medicine, University of Cantabria-IDIVAL, Santander, Spain Roberto Roiz-Santiañez & Benedicto Crespo-Facorro * Centro Investigación Biomédica en
Red Salud Mental, Santander, Spain Roberto Roiz-Santiañez, Diana Tordesillas-Gutierrez & Benedicto Crespo-Facorro * Section for Experimental Psychopathology and Neuroimaging, Department
of General Psychiatry, Heidelberg University, Heidelberg, Germany Bernd Kraemer & Oliver Gruber * Department of Neuroscience, Faculty of Medicine, Norwegian University of Science and
Technology, Trondheim, Norway Asta K. Håberg * Department of Radiology, St. Olav’s Hospital, Trondheim University Hospital, Trondheim, Norway Asta K. Håberg * Centre for Academic Mental
Health, Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, UK Hannah J. Jones * MRC Integrative Epidemiology Unit, Bristol Medical School, University of
Bristol, Bristol, UK Hannah J. Jones & George Davey Smith * NIHR Bristol Biomedical Research Centre, University Hospitals Bristol NHS Foundation Trust and University of Bristol, Bristol,
UK Hannah J. Jones * Department of Radiology, University of Calgary, Calgary, Alberta, Canada G. Bruce Pike * Department of Clinical Neurosciences, University of Calgary, Calgary, Alberta,
Canada G. Bruce Pike * Department of Psychiatry and Mental Health, University of Cape Town, Cape Town, South Africa Dan J. Stein, Jonathan C. Ipser, Nastassja Koen & Nynke A. Groenewold
* South African Medical Research Council Unit on Risk and Resilience in Mental Disorders, Cape Town, South Africa Dan J. Stein & Nastassja Koen * Laboratory of Epidemiology and
Population Sciences, National Institute on Aging, Intramural Research Program, National Institutes of Health, Bethesda, MD, USA Tamara B. Harris & Lenore J. Launer * INSERM, Research
Unit 1000 ‘Neuroimaging and Psychiatry’, Paris Saclay University and Paris Descartes University—DIGITEO Labs, Gif sur Yvette, France Irina Filippi, Hervé Lemaître & Jean-Luc Martinot *
Department of Neurology, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany A. Veronica Witte, Shahrzad Kharabian Masouleh, Matthias L. Schroeter & Arno
Villringer * Faculty of Medicine, CRC 1052 ‘Obesity Mechanisms’, University of Leipzig, Leipzig, Germany A. Veronica Witte & Arno Villringer * International Max Planck Research School
for Language Sciences, Nijmegen, the Netherlands Tulio Guadalupe * Language and Genetics Department, Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands Tulio Guadalupe,
Simon E. Fisher & Clyde Francks * Department of Psychiatry, University Medicine Greifswald, Greifswald, Germany Katharina Wittfeld, Deborah Janowitz & Hans J. Grabe * German Center
for Neurodegenerative Diseases, Greifswald, Germany Katharina Wittfeld, Wolfgang Hoffmann & Hans J. Grabe * Department of Medicine, University of Mississippi Medical Center, Jackson, MS,
USA Thomas H. Mosley * Department of Psychology, University of Pittsburgh, Pittsburgh, PA, USA James T. Becker * Department of Neurology, University of Pittsburgh, Pittsburgh, PA, USA James
T. Becker & Oscar L. Lopez * Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA, USA James T. Becker & Oscar L. Lopez * Research Unit-Genetic Epidemiology, Gottfried
Schatz Research Centre for Cell Signaling, Metabolism and Aging, Molecular Biology and Biochemistry, Medical University of Graz, Graz, Austria Yasaman Saba & Helena Schmidt * QIMR
Berghofer Medical Research Institute, Brisbane, Queensland, Australia Gabriel Cuellar-Partida, Lachlan T. Strike, Narelle K. Hansell, Nicholas G. Martin & Sarah E. Medland * Department
of Pharmacology, National University of Singapore, Singapore, Singapore Saima Hilal & Christopher Chen * Memory Aging and Cognition Center, National University Health System, Singapore,
Singapore Saima Hilal & Christopher Chen * Institute of Neurogenomics, Helmholtz Zentrum München, German Research Centre for Environmental Health, Neuherberg, Germany Nazanin
Mirza-Schreiber * Department of Biomedical Engineering, Illinois Institute of Technology, Chicago, IL, USA Konstantinos Arfanakis * Department of Diagnostic Radiology and Nuclear Medicine,
Rush University Medical Center, Chicago, IL, USA Konstantinos Arfanakis * Academic Unit for Psychiatry of Old Age, University of Melbourne, Melbourne, Victoria, Australia David Ames *
National Ageing Research Institute, Royal Melbourne Hospital, Melbourne, Victoria, Australia David Ames * Harvard Medical School, Boston, MA, USA Phil H. Lee, Randy L. Gollub, Robert C Green
& Jordan W. Smoller * Lurie Center for Autism, Massachusetts General Hospital, Harvard Medical School, Lexington, MA, USA Phil H. Lee * Psychiatric and Neurodevelopmental Genetics Unit,
Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA Phil H. Lee & Jordan W. Smoller * Stanley Center for Psychiatric Research, Broad Institute of MIT and
Harvard, Boston, MA, USA Phil H. Lee & Jordan W. Smoller * Amsterdam Public Health Research Institute, VU Medical Center, Amsterdam, the Netherlands Dorret I. Boomsma, Eco J. C. de Geus,
Jouke-Jan Hottenga, Iryna O. Fedko & Dennis van ‘t Ent * Department of Psychiatry, University of Oxford, Oxford, UK Simon Lovestone * NIHR Dementia Biomedical Research Unit, King’s
College London, London, UK Simon Lovestone * NORMENT, Department of Clinical Science, University of Bergen, Bergen, Norway Sudheer Giddaluru, Stephanie Le Hellard, Vidar M. Steen &
Srdjan Djurovic * Dr Einar Martens Research Group for Biological Psychiatry, Center for Medical Genetics and Molecular Medicine, Haukeland University Hospital, Bergen, Norway Sudheer
Giddaluru, Stephanie Le Hellard & Vidar M. Steen * Centre for integrated Sequencing, Aarhus University, Aarhus, Denmark Manuel Mattheisen * Department of Biomedicine, Aarhus University,
Aarhus, Denmark Manuel Mattheisen * The Lundbeck Foundation Initiative for Integrative Psychiatric Research (iPSYCH), Aarhus, Denmark Manuel Mattheisen * Department of Clinical Neuroscience,
Centre for Psychiatric Research, Karolinska Institutet, Stockholm, Sweden Manuel Mattheisen, Ingrid Agartz & Erik G. Jönsson * Stockholm Health Care Services, Stockholm County Council,
Stockholm, Sweden Manuel Mattheisen * UCL Queen Square Institute of Neurology, London, UK Dalia Kasperaviciute, Mar Matarin & Sanjay M. Sisodiya * Chalfont Centre for Epilepsy, Bucks, UK
Dalia Kasperaviciute & Sanjay M. Sisodiya * Centre for Youth Mental Health, The University of Melbourne, Melbourne, Victoria, Australia Lianne Schmaal * Orygen, The National Centre of
Excellence in Youth Mental Health, Melbourne, Victoria, Australia Lianne Schmaal * Department of Research and Development, Diakonhjemmet Hospital, Oslo, Norway Ingrid Agartz * Department of
Psychology, University of Bath, Bath, UK Esther Walton * Neuroimaging Unit, Technological Facilities, Valdecilla Biomedical Research Institute IDIVAL, Santander, Spain Diana
Tordesillas-Gutierrez * Avera Institute for Human Genetics, Sioux Falls, SD, USA Gareth E. Davies * Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada Jean Shin,
Manon Bernard & Zdenka Pausova * Center for Systems Neuroscience, Boston University, Boston, MA, USA Louis N. Vinke * Institute of Clinical Chemistry and Laboratory Medicine, University
Hospital Regensburg, Regensburg, Germany Ralph Burkhardt * Neurodegeneratives Diseases Institute, CNRS UMR 5293, Université de Bordeaux, Bordeaux, France Fabrice Crivello & Bernard
Mazoyer * Pennington Biomedical Research Center, Baton Rouge, LA, USA Owen Carmichael * Department of Adult Psychiatry, Institute for Clinical Medicine, University of Oslo, Oslo, Norway Unn
K. Haukvik * Brain Research Imaging Centre, University of Edinburgh, Edinburgh, UK Benjamin S. Aribisala, Maria C. Valdés Hernández & Mark E. Bastin * Department of Computer Science,
Lagos State University, Ojo, Nigeria Benjamin S. Aribisala * Queensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia Lachlan T. Strike, Narelle K. Hansell &
Margaret J. Wright * Ophthalmology and Visual Sciences Academic Clinical Program (Eye ACP), Duke-NUS Medical School, Singapore, Singapore Ching-Yu Cheng * Department of Behavioral Sciences,
Rush University Medical Center, Chicago, IL, USA Debra A. Fleischman * Centre for Healthy Brain Ageing, School of Psychiatry, University of New South Wales, Sydney, New South Wales,
Australia Amelia A. Assareh, Henry Brodaty, Simone Reppermund, Anbupalam Thalamuthu, Wei Wen, Perminder S. Sachdev & Karen A. Mather * Department of Neurology, Johns Hopkins University
School of Medicine, Baltimore, MD, USA Venkata S. Mattay & Daniel R. Weinberger * Department of Radiology, Johns Hopkins University School of Medicine, Baltimore, MD, USA Venkata S.
Mattay * Department of Psychology, Center for Brain Science, Harvard University, Cambridge, MA, USA Randy L. Buckner * Section of Gerontology and Geriatrics, Department of Medicine,
University of Perugia, Perugia, Italy Patrizia Mecocci * Center for Multimodal Imaging and Genetics, University of California, San Diego, San Diego, CA, USA Anders M. Dale * Department of
Cognitive Sciences, University of California, San Diego, San Diego, CA, USA Anders M. Dale * Department of Neurosciences, University of California. San Diego, San Diego, CA, USA Anders M.
Dale * Department of Psychiatry, University of California, San Diego, San Diego, CA, USA Anders M. Dale * Department of Radiology, University of California, San Diego, San Diego, CA, USA
Anders M. Dale * Division of Medical Genetics, Department of Biomedicine, University of Basel, Basel, Switzerland Sven Cichon * Institute of Human Genetics, University of Bonn, Bonn, Germany
Sven Cichon & Markus M. Nöthen * Institute for Neuroscience and Medicine: Structural and Functional Organisation of the Brain (INM-1), Research Centre Jülich, Jülich, Germany Sven
Cichon & Thomas W. Mühleisen * Reta Lila Weston Institute, UCL Institute of Neurology, London, UK Mar Matarin * Department of Molecular Neuroscience, UCL Institute of Neurology, London,
UK Mar Matarin * Department of ECE, University of New Mexico, Albuquerque, NM, USA Vince D. Calhoun * The Mind Research Network and LBERI, Albuquerque, NM, USA Vince D. Calhoun & Jessica
A. Turner * Tri-institutional Center for Translational Research in Neuroimaging and Data Science, Georgia State University, Atlanta, GA, USA Vince D. Calhoun & Jessica A. Turner *
Cerebral Imaging Centre, Douglas Mental Health University Institute, Montreal, Québec, Canada M. Mallar Chakravarty * Departments of Psychiatry and Biological and Biomedical Engineering,
McGill University, Montreal, Québec, Canada M. Mallar Chakravarty * Donders Centre for Cognitive Neuroimaging, Radboud University, Nijmegen, the Netherlands Andre F. Marquand, Elena
Shumskaya & Marcel P. Zwiers * Institute for Neuroscience and Medicine: Brain and Behaviour (INM-7), Research Centre Jülich, Jülich, Germany Shahrzad Kharabian Masouleh * Clinical
Neuropsychology Section, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands Jaap Oosterlaan * Emma Neuroscience Group, Department of Pediatrics, Emma Children’s Hospital, Amsterdam
Reproduction & Development, Amsterdam UMC, University of Amsterdam, Amsterdam, the Netherlands Jaap Oosterlaan * LabEx DISTALZ—U1167, RID-AGE-Risk Factors and Molecular Determinants of
Aging-Related Diseases, University of Lille, Lille, France Philippe Amouyel * Inserm U1167, Lille, France Philippe Amouyel * Centre Hospitalier Universitaire Lille, Lille, France Philippe
Amouyel * Institut Pasteur de Lille, Lille, France Philippe Amouyel * Institute of Diagnostic Radiology and Neuroradiology, University Medicine Greifswald, Greifswald, Germany Katrin
Hegenscheid & Norbert Hosten * Institute for Translational Genomics and Population Sciences, Los Angeles Biomedical Research Institute and Pediatrics at Harbor-UCLA Medical Center,
Torrance, CA, USA Jerome I. Rotter * Institute of Biological Psychiatry, Mental Health Center Sct. Hans, Roskilde, Denmark Andrew J. Schork * Neurogenomics Division, Translational Genomics
Research Institute, Phoenix, AZ, USA Andrew J. Schork & Matthew Huentelman * Faculty of Health, Queensland University of Technology, Brisbane, Queensland, Australia Greig I. de Zubicaray
& Katie L. McMahon * Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, Australia Greig I. de Zubicaray & Katie L. McMahon *
Academic Medicine Research Institute, Duke-NUS Medical School, Singapore, Singapore Tien Yin Wong * Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania,
Philadelphia, PA, USA Li Shen * Dementia Centre for Research Collaboration, UNSW, Sydney, New South Wales, Australia Henry Brodaty * 1st Department of Neurology, AHEPA University Hospital,
Aristotle University of Thessaloniki, Thessaloniki, Greece Magda Tsolaki * Division of Mind and Brain Research, D, Corporate member of Freie Universität Berliepartment of Psychiatry and
Psychotherapy, Charité—Universitätsmedizin Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Berlin, Germany Susanne Erk, Sebastian Mohnke & Henrik Walter * Brain
Center Rudolf Magnus, Human Neurogenetics Unit, UMC Utrecht, Utrecht, the Netherlands Kristel R. van Eijk * Department of Molecular and Cellular Therapeutics, Royal College of Surgeons in
Ireland, Dublin, Ireland Gianpiero L. Cavalleri * Department of Psychiatry, Leiden University Medical Center, Leiden, the Netherlands Nic J. A. van der Wee * Leiden Institute for Brain and
Cognition, Leiden University Medical Center, Leiden, the Netherlands Nic J. A. van der Wee * Department of Evolution and Genetics, Dagestan State University, Makhachkala, Russia Kazima B.
Bulayeva * University Medical Center Groningen, Department of Psychiatry, University of Groningen, Groningen, the Netherlands Jennifer S. Richards, Daan van Rooij, Catharina A. Hartman &
Pieter J. Hoekstra * Karakter Child and Adolescent Psychiatry University Center, Nijmegen, the Netherlands Nanda Rommelse & Jan K. Buitelaar * Section Epidemiology of Health Care and
Community Health, Institute for Community Medicine, University Medicine Greifswald, Greifswald, Germany Wolfgang Hoffmann * Centre for Clinical Brain Sciences, University of Edinburgh,
Edinburgh, UK Maria C. Valdés Hernández, Mark E. Bastin & Joanna M. Wardlaw * Clinical Translational Neuroscience Laboratory, Department of Psychiatry and Human Behavior, University of
California, Irvine, Irvine, CA, USA Theo G. M. van Erp * Center for the Neurobiology of Learning and Memory, University of California, Irvine, Irvine, CA, USA Theo G. M. van Erp * Department
of Psychiatry, Psychosomatics and Psychotherapy, University of Wuerzburg, Wuerzburg, Germany Christiane Wolf * Brain and Mind Centre, University of Sydney, Sydney, New South Wales,
Australia John B. J. Kwok * Neuroscience Research Australia, Sydney, New South Wales, Australia John B. J. Kwok, Peter R. Schofield & Karen A. Mather * University of New South Wales,
Sydney, New South Wales, Australia John B. J. Kwok * Department of Internal Medicine, INSERM U 1027, University of Toulouse, Toulouse, France Bruno Vellas * Department of Geriatric Medicine,
INSERM U 1027, University of Toulouse, Toulouse, France Bruno Vellas * Department of Psychiatry and Psychotherapy, Charité Universitätsmedizin Berlin, Berlin, Germany Andreas Heinz &
Nina Romanczuk-Seiferth * Center for Neurobehavioral Genetics, University of California, Los Angeles, Los Angeles, CA, USA Loes M. Olde Loohuis & Roel A. Ophoff * Neurology Division,
Beaumont Hospital, Dublin, Ireland Norman Delanty * Department of Psychiatry, Carver College of Medicine, University of Iowa, Iowa City, IA, USA Beng-Choon Ho & Thomas H. Wassink *
Interdepartmental Neuroscience Graduate Program, UCLA School of Medicine, Los Angeles, CA, USA Christopher R. K. Ching * Imaging of Dementia and Aging Laboratory, Department of Neurology,
University of California, Davis, Davis, CA, USA Baljeet Singh, Pauline Maillard & Evan Fletcher * Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA
Albert Hofman * School of Mental Health and Neuroscience, Faculty of Health, Medicine and Life Sciences, Maastricht University, Maastricht, the Netherlands Dennis van der Meer * Interfaculty
Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany Georg Homuth * Kaiser Permanent Washington Health Research Institute, Seattle, WA, USA
Bruce M. Psaty * Department of Epidemiology, University of Washington, Seattle, WA, USA Bruce M. Psaty & William T. Longstreth Jr * Department of Health Services, University of
Washington, Seattle, WA, USA Bruce M. Psaty * Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia Grant W. Montgomery * Medical and Molecular
Genetics, Indiana University School of Medicine, Indianapolis, IN, USA Tatiana M. Foroud & Andrew J. Saykin * Department of Developmental Disability Neuropsychiatry, School of
Psychiatry, UNSW Medicine, Sydney, New South Wales, Australia Simone Reppermund * Biomedical Research Unit for Dementia, King’s College London, London, UK Andrew Simmons * Department of
Neuroimaging, Institute of Psychiatry, King’s College London, London, UK Andrew Simmons * Division of Clinical Geriatrics, Department of Neurobiology, Care Sciences and Society, Karolinska
Institute, Stockholm, Sweden Andrew Simmons * Division of Genetics, Department of Medicine, Brigham and Women’s Hospital, Boston, MA, USA Robert C Green * Section of Computational
Biomedicine, Department of Medicine, Boston University School of Medicine, Boston, MA, USA Honghuang Lin * Department of Radiology, Mayo Clinic, Rochester, MN, USA Clifford R. Jack Jr *
School of Medical Sciences, UNSW, Sydney, New South Wales, Australia Peter R. Schofield * Department of Biomedicine, University of Basel, Basel, Switzerland Thomas W. Mühleisen * Cécile and
Oskar Vogt Institute for Brain Research, Heinrich Heine University Düsseldorf, Düsseldorf, Germany Thomas W. Mühleisen * Department of Psychiatry and Human Behavior, University of
California, Irvine, Irvine, CA, USA Steven G. Potkin * Laboratory of Neuro Imaging, USC Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of the
University of Southern California, Los Angeles, CA, USA Arthur W. Toga * Radiation Sciences, Umeå University, Umeå, Sweden Lars Nyberg * Department of Radiology, Massachusetts General
Hospital, Harvard Medical School, Boston, MA, USA Douglas N. Greve * Department of Internal Medicine, Erasmus Medical Center, Rotterdam, the Netherlands André G. Uitterlinden * Department of
Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD, USA Daniel R. Weinberger * Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore,
MD, USA Daniel R. Weinberger * Department of Psychiatry, Johns Hopkins University School of Medicine, Baltimore, MD, USA Daniel R. Weinberger * Imaging Physics, Faculty of Applied Sciences,
Delft University of Technology, Delft, the Netherlands Wiro J. Niessen * Institut Pasteur, Paris, France Roberto Toro * Department of Neurology, CHU de Bordeaux, Bordeaux, France Christophe
Tzourio & Stéphanie Debette * Department of Neurology, University of Washington, Seattle, WA, USA William T. Longstreth Jr * Department of Neurology, Erasmus MC, Rotterdam, the
Netherlands M. Kamran Ikram * Cognitive Neuroscience Center, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands Marie-Jose van Tol * Bloorview Research
Institute, Holland Bloorview Kids Rehabilitation Hospital, Toronto, Ontario, Canada Tomas Paus * Department of Psychology, University of Toronto, Toronto, Ontario, Canada Tomas Paus *
Department of Psychiatry, University of Toronto, Toronto, Ontario, Canada Tomas Paus * Clinic for Cognitive Neurology, University Clinic Leipzig, Leipzig, Germany Matthias L. Schroeter *
HMNC Brain Health, Munich, Germany Florian Holsboer * Department of Neurology, Hopital Erasme, Universite Libre de Bruxelles, Brussels, Belgium Chantal Depondt & Massimo Pandolfo *
Department of Psychology, Georgia State University, Atlanta, GA, USA Jessica A. Turner * Department of Medical Genetics, Oslo University Hospital, Oslo, Norway Srdjan Djurovic * Munich
Cluster for Systems Neurology (SyNergy), Munich, Germany Bertram Müller-Myhsok * Institute of Translational Medicine, University of Liverpool, Liverpool, UK Bertram Müller-Myhsok * Institute
of Clinical Medicine—Neurology, University of Eastern Finland, Kuopio, Finland Hilkka Soininen * Neurocentre Neurology, Kuopio University Hospital, Kuopio, Finland Hilkka Soininen *
Institute of Clinical Chemistry and Laboratory Medicine, University Medicine Greifswald, Greifswald, Germany Matthias Nauck * German Center for Cardiovascular Research (partner site
Greifswald), Greifswald, Germany Matthias Nauck & Henry Völzke * Department of Neuroinformatics, Araya, Tokyo, Japan Ryota Kanai * Institute of Cognitive Neuroscience, University College
London, London, UK Ryota Kanai * School of Psychology, University of Sussex, Brighton, UK Ryota Kanai * Department of Neurobiology, Care Sciences and Society, Karolinska Institutet,
Stockholm, Sweden Eric Westman * Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA René S. Kahn * Department of Child and Adolescent Psychiatry/Psychology,
Erasmus MC-Sophia Children’s Hospital, Rotterdam, the Netherlands Tonya White & Neeltje E. M. van Haren * Department of Clinical Genetics, Maastricht University Medical Center,
Maastricht, the Netherlands Han G. Brunner * GROW School for Oncology and Developmental Biology, Maastricht, the Netherlands Han G. Brunner * Centre for Advanced Imaging, University of
Queensland, Brisbane, Queensland, Australia Margaret J. Wright * Department of Genomics, Life and Brain Center, University of Bonn, Bonn, Germany Markus M. Nöthen * Department of Psychiatry,
Erasmus Medical Center, Rotterdam, the Netherlands Roel A. Ophoff * Neuropsychiatric Institute, Prince of Wales Hospital, Sydney, New South Wales, Australia Perminder S. Sachdev *
Department of Psychology, VU University Amsterdam, Amsterdam, the Netherlands Dirk J. Heslenfeld * Center for Imaging of Neurodegenerative Disease, San Francisco VA Medical Center,
University of California, San Francisco, San Francisco, CA, USA Michael W. Weiner * Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco,
CA, USA Michael W. Weiner * Leiden Academic Centre for Drug Research, Leiden University, Leiden, the Netherlands Cornelia M. van Duijn * Human Genetics Center, University of Texas Health
Science Center at Houston, Houston, TX, USA Myriam Fornage * UK Dementia Research Institute, University of Edinburgh, Edinburgh, UK Joanna M. Wardlaw * Department of Neurology, Center for
Neuroscience, University of California, Davis, Sacramento, CA, USA Charles DeCarli * Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA Joshua M. Shulman * Department
of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA Joshua M. Shulman * Jan and Dan Duncan Neurological Research Institute, Texas Children’s Hospital, Houston, TX,
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C.L.S. drafted the manuscript with contributions from H.H.H.A., D.P.H., C.C.W., T.V.L., A.A.-V., S.Ehrlich., A.K.H., M.W.V., D.J., T.G.M.v.E., C.D.W., M.J.W., S.E.F., K.A.M., P.J.H., B.F.,
H.J.G., A.D.J., O.L.L., S.Debette, S.E.M., J.M.S., P.M.T., S.S. and M.A.I. M.S., N.J., L.R.Y., T.V.L., G.C., L.A., M.E.R., A.d.B., I.K., M.A., S.A., S.E., R.R.-S., A.K.H., H.J.J.,
A.Stevens., J.B., M.W.V., A.V.W., K.W., N.A., S.H., A.L.G., P.H.L., S.G., S.L.H., D.K., L.Schmaal, S.M.L., I.A., E.W., D.T.-G., J.C.I., L.N.V., R.B., F.C., D.J., O.C., U.K.H., B.S.A.,
C.-Y.C., A.A.A., M.P.B., A.F.M., S.K.M., P.A., A.J.Schork., D.C.M.L., T.Y.W., L.Shen, P.G.S., E.J.C.d.G., M.T., K.R.v.E., N.J.A.v.d.W., A.M.M., J.S.R., N.R., W.H., M.C.V.H., J.B.J.K.,
L.M.O.L., A.Hofman, G.H., M.E.B., S.R., J.-J.H., A.Simmons, N.H., P.R.S., T.W.M., P.Maillard, O.Gruber, N.A.G., J.E.S., H.Lemaître, B.M.-M., D.v.R., I.J.D., R.M.B., I.M., R.K., H.v.B.,
M.J.W., D.v.‘t.E., M.M.N., S.E.F., A.S.B., K.A.M., N.R.-S., D.J.H., H.J.G., C.M.v.D., J.M.W., C.DeCarli, P.L.D.J. and V.G. contributed to the preparation of data. C.L.S., H.H.H.A., D.P.H.,
M.J.K., J.L.S., M.S., M.Sargurupremraj, N.J., G.V.R., A.V.S., J.C.B., X.J., M.Luciano., E.H., A.Teumer, S.J.v.d.L., J.Y., L.R.Y., S.L., K.J.Y., G.C., M.E.R., N.J.A., H.J.J., A.V.W., S.H.,
N.M.S., S.G., D.T.G., J.S., C.-Y.C., L.M.O.L., Q.Y., A.Thalamuthu, I.O.F., D.v.‘t.E., C.Depondt and P.L.D.J. performed the statistical analyses. C.L.S., H.H.H.A., C.C.W., M.J.K., T.V.L.,
S.L., Y.H., K.J.Y., J.D.E., Q.Y. and A.D.J. carried out the downstream analyses. All authors reviewed the manuscript for intellectual content. CORRESPONDING AUTHORS Correspondence to Claudia
L. Satizabal or M. Arfan Ikram. ETHICS DECLARATIONS COMPETING INTERESTS D.P.H. is currently an employee at Genentech. D.J. has received travel and speaker’s honoraria from Janssen–Cilag, as
well as research funding from DFG. R.L.B. is a consultant for Pfizer and Roche. P.A. is a scientific adviser for Genoscreen. T.Y.W. is a consultant and advisory board member for Allergan,
Bayer, Boehringer–Ingelheim, Genentech, Merck, Novartis, Oxurion (formerly ThromboGenics) and Roche, and is a co-founder of Plano and EyRiS. A.M.M. has received grant support from Eli Lilly,
Janssen, Pfizer and the Sackler Trust. B.M.P. serves on the steering committee of the Yale Open Data Access Project funded by Johnson & Johnson. A.M.-L. is a member of the advisory
board for the Lundbeck International Neuroscience Foundation and Brainsway, a member of the editorial board for the American Association for the Advancement of Science and Elsevier, a
faculty member of the Lundbeck International Neuroscience Foundation and a consultant for Boehringer Ingelheim. W.J.N. is the founder and scientific lead of Quantib BV, in addition to being
a shareholder. M.M.N. is a shareholder of Life & Brain, receives a salary from Life & Brain, has received support from Shire for attending conferences and has received financial
remuneration from the Lundbeck Foundation, Robert Bosch Foundation and Deutsches Ärzteblatt for participation in scientific advisory boards. B.F. has received educational speaking fees from
Shire and Medice. H.J.G. has received travel grants and speaker’s honoraria from Fresenius Medical Care, Neuraxpharm and Janssen–Cilag, as well as research funding from Fresenius Medical
Care. ADDITIONAL INFORMATION PUBLISHER’S NOTE Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. SUPPLEMENTARY INFORMATION
SUPPLEMENTARY INFORMATION Supplementary Note and Figs. 1–4 REPORTING SUMMARY SUPPLEMENTARY TABLES Supplementary Tables 1–21 RIGHTS AND PERMISSIONS Reprints and permissions ABOUT THIS
ARTICLE CITE THIS ARTICLE Satizabal, C.L., Adams, H.H.H., Hibar, D.P. _et al._ Genetic architecture of subcortical brain structures in 38,851 individuals. _Nat Genet_ 51, 1624–1636 (2019).
https://doi.org/10.1038/s41588-019-0511-y Download citation * Received: 26 September 2017 * Accepted: 05 September 2019 * Published: 21 October 2019 * Issue Date: November 2019 * DOI:
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